Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prmB50S ribosomal protein L3 glutamine methyltransferase. (354 aa)    
Predicted Functional Partners:
ACWI_35190
B12 binding domain protein.
 
 
 0.991
thiC_2
Phosphomethylpyrimidine synthase.
    
 0.944
thiC_3
Phosphomethylpyrimidine synthase.
    
 0.944
mtaB_2
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
 
  
 0.925
ACWI_02830
Hypothetical protein.
 
  
 
0.919
cobT_2
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.773
pksJ
Polyketide synthase PksJ.
 
   
 0.686
ACWI_11780
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.633
ACWI_01220
Hypothetical protein.
  
     0.533
ACWI_14300
Hypothetical protein.
  
     0.530
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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