rpfG_19 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpfG_19

Cyclic di-GMP phosphodiesterase response regulator RpfG. (355 aa)

Predicted Functional Partners:

pleD_5

0.648

potA

0.487

cph2_14

0.480

cysW

0.465

metN_3

0.465

yliE

0.443

potB

0.424

ydcV

0.424

ydaM_8

0.419

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cph2_14	rpfG_19	ACWI_28340	ACWI_35660	Phytochrome-like protein cph2.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.480
cph2_14	ydaM_8	ACWI_28340	ACWI_20390	Phytochrome-like protein cph2.	Putative diguanylate cyclase YdaM.	0.467
cph2_14	yliE	ACWI_28340	ACWI_16670	Phytochrome-like protein cph2.	Putative cyclic di-GMP phosphodiesterase YliE.	0.562
cysW	metN_3	ACWI_35640	ACWI_35650	Sulfate transport system permease protein CysW.	Methionine import ATP-binding protein MetN.	0.984
cysW	potA	ACWI_35640	ACWI_35670	Sulfate transport system permease protein CysW.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.468
cysW	rpfG_19	ACWI_35640	ACWI_35660	Sulfate transport system permease protein CysW.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.465
metN_3	cysW	ACWI_35650	ACWI_35640	Methionine import ATP-binding protein MetN.	Sulfate transport system permease protein CysW.	0.984
metN_3	rpfG_19	ACWI_35650	ACWI_35660	Methionine import ATP-binding protein MetN.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.465
pleD_5	rpfG_19	ACWI_30010	ACWI_35660	Response regulator PleD.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.648
pleD_5	ydaM_8	ACWI_30010	ACWI_20390	Response regulator PleD.	Putative diguanylate cyclase YdaM.	0.460
pleD_5	yliE	ACWI_30010	ACWI_16670	Response regulator PleD.	Putative cyclic di-GMP phosphodiesterase YliE.	0.732
potA	cysW	ACWI_35670	ACWI_35640	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	Sulfate transport system permease protein CysW.	0.468
potA	potB	ACWI_35670	ACWI_35680	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	Spermidine/putrescine transport system permease protein PotB.	0.999
potA	rpfG_19	ACWI_35670	ACWI_35660	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.487
potA	ydcV	ACWI_35670	ACWI_35690	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	Inner membrane ABC transporter permease protein YdcV.	0.999
potB	potA	ACWI_35680	ACWI_35670	Spermidine/putrescine transport system permease protein PotB.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.999
potB	rpfG_19	ACWI_35680	ACWI_35660	Spermidine/putrescine transport system permease protein PotB.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.424
potB	ydcV	ACWI_35680	ACWI_35690	Spermidine/putrescine transport system permease protein PotB.	Inner membrane ABC transporter permease protein YdcV.	0.999
rpfG_19	cph2_14	ACWI_35660	ACWI_28340	Cyclic di-GMP phosphodiesterase response regulator RpfG.	Phytochrome-like protein cph2.	0.480
rpfG_19	cysW	ACWI_35660	ACWI_35640	Cyclic di-GMP phosphodiesterase response regulator RpfG.	Sulfate transport system permease protein CysW.	0.465