STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAV94337.1CRISPR-associated protein cas5 family protein. (237 aa)    
Predicted Functional Partners:
GAV94332.1
CRISPR-associated helicase cas3.
 
 
 0.984
GAV94333.1
CRISPR-associated helicase cas3.
 
 
 0.981
GAV94340.1
CRISPR-associated protein Cas2.
 
   
 0.968
cas1
CRISPR-associated protein cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.963
GAV94334.1
Cse1 family CRISPR-associated protein.
 
     0.961
GAV94335.1
Hypothetical protein.
 
     0.961
GAV94336.1
CRISPR system CASCADE complex protein CasC.
 
     0.961
GAV94338.1
CRISPR-associated protein, Cse3 family.
 
     0.961
Your Current Organism:
Actinomyces denticolens
NCBI taxonomy Id: 52767
Other names: A. denticolens, ATCC 43322, CCUG 32758, CIP 103126, DSM 20671, NCTC 11490, strain Sh 8/4303
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.