STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAV95552.1GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (789 aa)    
Predicted Functional Partners:
rpmF
Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.999
rplU
Hypothetical protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
   0.999
rpmA
Hypothetical protein; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.999
rpmI
Hypothetical protein; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.999
rplT
Hypothetical protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.999
rpsT
Hypothetical protein; Binds directly to 16S ribosomal RNA.
    
   0.999
rpsO
Hypothetical protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.999
rpsB
Hypothetical protein; Belongs to the universal ribosomal protein uS2 family.
    
   0.999
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.999
rpsP
Hypothetical protein; Belongs to the bacterial ribosomal protein bS16 family.
   
   0.999
Your Current Organism:
Actinomyces denticolens
NCBI taxonomy Id: 52767
Other names: A. denticolens, ATCC 43322, CCUG 32758, CIP 103126, DSM 20671, NCTC 11490, strain Sh 8/4303
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.