STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU65628.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
AKU65626.1
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AKU65627.1
Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family.
       0.714
AKU66000.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.
  
    0.674
AKU65625.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.667
AKU65624.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.664
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.662
AKU65999.1
RNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.438
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.435
Your Current Organism:
Schaalia meyeri
NCBI taxonomy Id: 52773
Other names: ATCC 35568, Actinobacterium meyeri, Actinomyces meyeri, CCUG 21024, CIP 103148, DSM 20733, LMG 16161, LMG:16161, S. meyeri, VPI 8617, personal::Prvot 2477B, strain Prvot 2477B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.