STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
APO45124.1
Altronate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.984
APO48241.1
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.922
APO46166.1
Converts D-mannonate to D-mannuronate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.874
araD
L-ribulose-5-phosphate 4-epimerase; Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.831
APO43231.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.821
APO44261.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.821
APO48309.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.821
APO43578.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.816
APO43940.1
Glycoside hydrolase 43 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
    
 0.813
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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