STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO48000.1Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (480 aa)    
Predicted Functional Partners:
APO45132.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
APO48420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.761
APO47159.1
Arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
    0.759
APO48137.1
Exoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
  
  
 0.755
APO44009.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
APO44368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
APO48380.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.732
APO47118.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.728
APO48465.1
Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.719
APO45061.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.
 
  
 0.714
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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