STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO42948.1Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)    
Predicted Functional Partners:
APO48005.1
Pectin methylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.921
APO48071.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
     0.855
kduI
5-dehydro-4-deoxy-D-glucuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.806
APO48101.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.775
APO47730.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.725
APO48006.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
APO45124.1
Altronate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.682
APO48275.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.652
BS614_05350
Glycosyl hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
APO48241.1
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.627
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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