STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO42979.1Para-nitrobenzyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family. (485 aa)    
Predicted Functional Partners:
APO48011.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.452
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.444
APO45129.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.435
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.428
APO46053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.424
APO42980.1
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
APO45806.1
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
APO42981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
APO46088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.410
APO45724.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.406
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.