STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO42982.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)    
Predicted Functional Partners:
APO48012.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.954
APO42983.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.912
APO42980.1
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
APO48011.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
APO44417.1
Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.773
APO44418.1
Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.742
APO42981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.740
APO42984.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.
       0.715
APO48243.1
Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.602
APO45330.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.