STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO43178.1Sporulation protein YabP; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)    
Predicted Functional Partners:
APO43179.1
Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
APO48035.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
APO43180.1
Septation ring formation regulator EzrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.850
APO43173.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.841
APO46937.1
Sporulation protein YqfD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.838
APO42665.1
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.823
APO42643.1
Sporulation transcriptional regulator SpoIIID; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.822
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.814
APO43177.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.810
APO45142.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.