STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO43791.1Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily. (290 aa)    
Predicted Functional Partners:
APO45333.1
Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.926
APO42830.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
APO43442.1
Inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
APO43792.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
APO43790.1
UV damage endonuclease UvsE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.759
APO43789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
ddl-2
D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.693
nusA
Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.
   
 
 0.670
APO48100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
APO46742.1
16S rRNA (cytosine(967)-C(5))-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.654
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.