STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO44119.1Citrate lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)    
Predicted Functional Partners:
APO44120.1
Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.970
APO44121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.968
APO48132.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.960
APO44122.1
Carbamoyl-phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.951
APO47005.1
Malonate decarboxylase acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.950
APO44118.1
Tellurium resistance protein TerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.927
APO44117.1
Chemical-damaging agent resistance protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.915
APO44116.1
Chemical-damaging agent resistance protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.863
APO44115.1
Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.849
APO44114.1
Tellurite resistance TerB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.