APO44169.1 protein (Paenibacillus xylanexedens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APO44169.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)

Predicted Functional Partners:

APO48142.1

0.813

APO48447.1

0.771

APO44270.1

0.768

APO47291.1

0.768

APO48305.1

0.761

APO46328.1

0.761

APO43399.1

0.760

APO48211.1

0.760

APO45950.1

0.760

APO42727.1

0.759

Your Current Organism:

Paenibacillus xylanexedens

NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO42727.1	APO44169.1	BS614_00610	BS614_09240	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
APO43399.1	APO44169.1	BS614_04585	BS614_09240	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO44169.1	APO42727.1	BS614_09240	BS614_00610	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
APO44169.1	APO43399.1	BS614_09240	BS614_04585	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO44169.1	APO44270.1	BS614_09240	BS614_09810	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APO44169.1	APO45950.1	BS614_09240	BS614_19245	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO44169.1	APO46328.1	BS614_09240	BS614_21370	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
APO44169.1	APO47291.1	BS614_09240	BS614_26730	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APO44169.1	APO48142.1	BS614_09240	BS614_09210	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
APO44169.1	APO48211.1	BS614_09240	BS614_12390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO44169.1	APO48305.1	BS614_09240	BS614_18665	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
APO44169.1	APO48447.1	BS614_09240	BS614_27635	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
APO44270.1	APO44169.1	BS614_09810	BS614_09240	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APO45950.1	APO44169.1	BS614_19245	BS614_09240	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO46328.1	APO44169.1	BS614_21370	BS614_09240	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
APO47291.1	APO44169.1	BS614_26730	BS614_09240	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APO48142.1	APO44169.1	BS614_09210	BS614_09240	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
APO48211.1	APO44169.1	BS614_12390	BS614_09240	Polysaccharide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APO48305.1	APO44169.1	BS614_18665	BS614_09240	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
APO48447.1	APO44169.1	BS614_27635	BS614_09240	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About