STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO44329.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
APO44330.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.963
APO48162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
APO44327.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.958
APO44331.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.956
APO44328.1
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.949
APO44332.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.944
APO44325.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.933
APO43350.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.896
APO44323.1
Phage tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.882
APO44324.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.879
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.