APO46134.1 protein (Paenibacillus xylanexedens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APO46134.1

GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)

Predicted Functional Partners:

APO44349.1

0.741

APO44223.1

0.662

APO45655.1

0.655

APO46199.1

0.641

APO48006.1

0.639

APO46192.1

0.634

APO47164.1

0.629

APO45730.1

0.624

APO42718.1

0.619

APO44852.1

0.616

Your Current Organism:

Paenibacillus xylanexedens

NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO42718.1	APO44349.1	BS614_00565	BS614_10265	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO42718.1	APO46134.1	BS614_00565	BS614_20280	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
APO44223.1	APO44349.1	BS614_09550	BS614_10265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44223.1	APO46134.1	BS614_09550	BS614_20280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
APO44223.1	APO48006.1	BS614_09550	BS614_01915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APO44349.1	APO42718.1	BS614_10265	BS614_00565	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO44223.1	BS614_10265	BS614_09550	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO44852.1	BS614_10265	BS614_13105	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO45655.1	BS614_10265	BS614_17610	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO45730.1	BS614_10265	BS614_18030	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO46134.1	BS614_10265	BS614_20280	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
APO44349.1	APO46192.1	BS614_10265	BS614_20635	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO46199.1	BS614_10265	BS614_20680	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO47164.1	BS614_10265	BS614_25995	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44349.1	APO48006.1	BS614_10265	BS614_01915	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44852.1	APO44349.1	BS614_13105	BS614_10265	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO44852.1	APO46134.1	BS614_13105	BS614_20280	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
APO45655.1	APO44349.1	BS614_17610	BS614_10265	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
APO45655.1	APO46134.1	BS614_17610	BS614_20280	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APO45730.1	APO44349.1	BS614_18030	BS614_10265	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661

page 1 of 2

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About