STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO46235.1Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)    
Predicted Functional Partners:
APO48349.1
Spore coat protein GerQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
APO46351.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.818
APO44438.1
DUF4367 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
APO46899.1
precorrin-3B C(17)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.759
APO47614.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.750
APO46564.1
Germination protein YpeB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.718
APO47841.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
APO48100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
APO46969.1
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.657
APO42626.1
Spore protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.634
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.