STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO46935.1Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (749 aa)    
Predicted Functional Partners:
APO46936.1
Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.831
ybeY
rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.830
APO46937.1
Sporulation protein YqfD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.822
APO46938.1
Sporulation protein YqfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.822
APO46933.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.803
APO46940.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.730
APO46932.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.691
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.690
APO48401.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.676
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
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