STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addBHelicase-exonuclease AddAB subunit AddB; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1167 aa)    
Predicted Functional Partners:
addA
Helicase-exonuclease AddAB subunit AddA; ATP-dependent DNA helicase.
 
 
 0.998
sbcD
Exonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.908
APO46947.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.842
APO48402.1
rRNA large subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.735
APO46952.1
Sodium:phosphate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.652
APO46923.1
tRNA (adenine-N(1))-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.618
APO46943.1
Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
APO44469.1
Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
APO46793.1
Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.474
APO47361.1
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.455
Your Current Organism:
Paenibacillus xylanexedens
NCBI taxonomy Id: 528191
Other names: DSM 21292, NRRL B-51090, P. xylanexedens, Paenibacillus sp. B22a, Paenibacillus xylanexedens Nelson et al. 2009, strain B22a
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.