STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4S8IKH7FCP1 homology domain-containing protein. (458 aa)    
Predicted Functional Partners:
A0A4S8J3C8
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.941
A0A4S8K4C8
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.941
A0A4S8IM19
LNS2 domain-containing protein.
    
 0.867
A0A4S8JGB0
LNS2 domain-containing protein.
    
 0.867
A0A4V4H4R6
LNS2 domain-containing protein.
    
 0.867
A0A4S8J0N9
Uncharacterized protein.
   
 0.866
A0A4S8J8F3
Uncharacterized protein.
    
 0.862
A0A4S8JBU8
RPOLD domain-containing protein.
    
 0.818
A0A4S8JHY4
RPOLD domain-containing protein.
    
 0.818
A0A4S8JRM1
RPOLD domain-containing protein.
    
 0.818
Your Current Organism:
Musa balbisiana
NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana
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