A0A4S8IQ82 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8IQ82

AAA domain-containing protein. (1003 aa)

Predicted Functional Partners:

A0A4S8IPQ1

0.999

A0A4S8JI29

0.999

A0A4S8JKY0

0.998

A0A4S8IH06

0.996

A0A4S8J722

0.995

A0A4S8JH47

0.995

A0A4S8JSS6

0.995

A0A4S8KG71

0.994

A0A4V4H5Y2

0.990

A0A4S8JQ60

0.987

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8IH06	A0A4S8IPQ1	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.993
A0A4S8IH06	A0A4S8IQ82	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.996
A0A4S8IH06	A0A4S8J722	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.994
A0A4S8IH06	A0A4S8JH47	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.958
A0A4S8IH06	A0A4S8JI29	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.967
A0A4S8IH06	A0A4S8JKY0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.999
A0A4S8IH06	A0A4S8JQ60	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	WD_REPEATS_REGION domain-containing protein.	0.997
A0A4S8IH06	A0A4S8JSS6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Protein kinase domain-containing protein.	0.994
A0A4S8IH06	A0A4S8KG71	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	AAA domain-containing protein.	0.957
A0A4S8IH06	A0A4V4H5Y2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA_pol_E_B domain-containing protein.	0.999
A0A4S8IPQ1	A0A4S8IH06	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.993
A0A4S8IPQ1	A0A4S8IQ82	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A4S8IPQ1	A0A4S8J722	Uncharacterized protein.	DNA polymerase.	0.971
A0A4S8IPQ1	A0A4S8JH47	Uncharacterized protein.	AAA domain-containing protein.	0.984
A0A4S8IPQ1	A0A4S8JI29	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A4S8IPQ1	A0A4S8JKY0	Uncharacterized protein.	DNA polymerase.	0.975
A0A4S8IPQ1	A0A4S8JQ60	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.861
A0A4S8IPQ1	A0A4S8JSS6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
A0A4S8IPQ1	A0A4S8KG71	Uncharacterized protein.	AAA domain-containing protein.	0.990
A0A4S8IPQ1	A0A4V4H5Y2	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.769