A0A4S8IU96 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8IU96

Uncharacterized protein. (234 aa)

Predicted Functional Partners:

A0A4S8IFL1

0.836

A0A4S8IJ91

0.836

A0A4S8ITC5

0.836

A0A4S8IY12

0.836

A0A4S8J7K4

0.836

A0A4S8JEQ8

0.836

A0A4S8JHR3

0.836

A0A4S8JM09

0.836

A0A4S8K6Y1

0.836

A0A4S8KE35

0.836

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8IFL1	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IJ91	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8ITC5	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8IFL1	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8IJ91	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8ITC5	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8IY12	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8J7K4	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8JEQ8	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8JHR3	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8JM09	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8K6Y1	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IU96	A0A4S8KE35	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8IY12	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8J7K4	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8JEQ8	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8JHR3	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8JM09	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8K6Y1	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A4S8KE35	A0A4S8IU96	Uncharacterized protein.	Uncharacterized protein.	0.836