A0A4S8IZE5 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8IZE5

RING-type domain-containing protein. (206 aa)

Predicted Functional Partners:

A0A4S8JTK6

0.565

A0A4S8K3M3

0.551

A0A4S8I953

0.471

A0A4S8J302

0.419

A0A4S8J510

0.419

A0A4S8J8G2

0.419

A0A4S8K5P3

0.419

A0A4V4H7P1

0.419

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8I953	A0A4S8IZE5	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	RING-type domain-containing protein.	0.471
A0A4S8I953	A0A4S8J302	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ribosomal_S27 domain-containing protein.	0.803
A0A4S8I953	A0A4S8J510	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ribosomal_S27 domain-containing protein.	0.803
A0A4S8I953	A0A4S8J8G2	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ribosomal_S27 domain-containing protein.	0.803
A0A4S8I953	A0A4S8JTK6	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Uncharacterized protein.	0.999
A0A4S8I953	A0A4S8K3M3	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	HECT domain-containing protein.	0.999
A0A4S8I953	A0A4S8K5P3	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ribosomal_S27 domain-containing protein.	0.803
A0A4S8I953	A0A4V4H7P1	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ribosomal_S27 domain-containing protein.	0.803
A0A4S8IZE5	A0A4S8I953	RING-type domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.471
A0A4S8IZE5	A0A4S8J302	RING-type domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.419
A0A4S8IZE5	A0A4S8J510	RING-type domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.419
A0A4S8IZE5	A0A4S8J8G2	RING-type domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.419
A0A4S8IZE5	A0A4S8JTK6	RING-type domain-containing protein.	Uncharacterized protein.	0.565
A0A4S8IZE5	A0A4S8K3M3	RING-type domain-containing protein.	HECT domain-containing protein.	0.551
A0A4S8IZE5	A0A4S8K5P3	RING-type domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.419
A0A4S8IZE5	A0A4V4H7P1	RING-type domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.419
A0A4S8J302	A0A4S8I953	Ribosomal_S27 domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.803
A0A4S8J302	A0A4S8IZE5	Ribosomal_S27 domain-containing protein.	RING-type domain-containing protein.	0.419
A0A4S8J302	A0A4S8JTK6	Ribosomal_S27 domain-containing protein.	Uncharacterized protein.	0.952
A0A4S8J302	A0A4S8K3M3	Ribosomal_S27 domain-containing protein.	HECT domain-containing protein.	0.942

page 1 of 3

Network Stats

number of nodes:

4

number of edges:

3

average node degree:

1.5

avg. local clustering coefficient:

0.75

expected number of edges:

3

PPI enrichment p-value:

0.563

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004673

Protein histidine kinase activity

4 of 56

1.51

1.16

0.0023

GO:0016772

Transferase activity, transferring phosphorus-containing groups

7 of 233

1.14

0.00011

GO:0003899

DNA-directed 5-3 RNA polymerase activity

2 of 11

1.92

0.78

0.0334

GO:0016740

Transferase activity

8 of 724

0.7

0.53

0.0033

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000428

DNA-directed RNA polymerase complex

2 of 11

1.92

0.85

0.0243

GO:0140535

Intracellular protein-containing complex

3 of 44

1.49

0.83

0.0173

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2730

PAS domain, and CHASE3 domain

4 of 17

2.03

2.19

3.57e-05

CL:2726

Mixed, incl. PAS domain, and Bacterial chemotaxis

5 of 41

1.75

2.02

2.59e-05

CL:2754

Histidine Phosphotransfer domain, and YefM-like superfamily

2 of 5

2.26

1.16

0.0070

CL:257

RNA polymerase, and S1 domain

2 of 5

2.26

1.16

0.0070

CL:2731

PAS domain, and CHASE3 domain

2 of 12

1.88

0.82

0.0264

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sya03020

RNA polymerase

2 of 4

2.36

1.15

0.0076

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0240

DNA-directed RNA polymerase

2 of 6

2.18

1.01

0.0133

KW-0597

Phosphoprotein

3 of 73

1.27

0.64

0.0366

KW-0808

Transferase

7 of 479

0.83

0.62

0.0038

KW-0175

Coiled coil

4 of 202

0.96

0.52

0.0393

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR008207

Signal transduction histidine kinase, phosphotransfer (Hpt) domain

3 of 3

2.66

1.97

0.00024

IPR036641

HPT domain superfamily

3 of 4

2.54

1.95

0.00024

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00073

Histidine Phosphotransfer domain

3 of 3

2.66

2.52

2.17e-05

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About