A0A4S8JB66 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8JB66

Uncharacterized protein. (559 aa)

Predicted Functional Partners:

A0A4S8JL72

0.935

A0A4S8ITN8

0.825

A0A4S8IQB9

0.811

A0A4S8JBC3

0.811

A0A4S8I9K6

0.806

A0A4S8KAN1

0.791

A0A4S8J0T8

0.771

A0A4S8IFQ6

0.727

A0A4S8ISY4

0.725

A0A4S8INP6

0.711

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8I9K6	A0A4S8IFQ6	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.806
A0A4S8I9K6	A0A4S8INP6	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.902
A0A4S8I9K6	A0A4S8IQB9	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.612
A0A4S8I9K6	A0A4S8ISY4	TPR_REGION domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.866
A0A4S8I9K6	A0A4S8ITN8	TPR_REGION domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.642
A0A4S8I9K6	A0A4S8J0T8	TPR_REGION domain-containing protein.	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.476
A0A4S8I9K6	A0A4S8JB66	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.806
A0A4S8I9K6	A0A4S8JBC3	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.612
A0A4S8I9K6	A0A4S8JL72	TPR_REGION domain-containing protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.881
A0A4S8I9K6	A0A4S8KAN1	TPR_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.544
A0A4S8IFQ6	A0A4S8I9K6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.806
A0A4S8IFQ6	A0A4S8INP6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
A0A4S8IFQ6	A0A4S8IQB9	Uncharacterized protein.	RRM domain-containing protein.	0.992
A0A4S8IFQ6	A0A4S8ISY4	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.999
A0A4S8IFQ6	A0A4S8ITN8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.959
A0A4S8IFQ6	A0A4S8J0T8	Uncharacterized protein.	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.989
A0A4S8IFQ6	A0A4S8JB66	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A4S8IFQ6	A0A4S8JBC3	Uncharacterized protein.	RRM domain-containing protein.	0.992
A0A4S8IFQ6	A0A4S8JL72	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.998
A0A4S8IFQ6	A0A4S8KAN1	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.957