A0A4S8JL63 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S8JL63

Uncharacterized protein. (165 aa)

Predicted Functional Partners:

A0A4S8JWG4

0.538

A0A4S8IGF5

0.508

A0A4S8J6T0

0.508

A0A4S8J927

0.508

A0A4S8JFT5

0.508

A0A4S8JLV0

0.508

A0A4S8JTW9

0.508

A0A4S8JTZ1

0.508

A0A4S8JWR3

0.508

A0A4S8JYM2

0.508

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8IGF5	A0A4S8JL63	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8J6T0	A0A4S8JL63	DsbD_2 domain-containing protein.	Uncharacterized protein.	0.508
A0A4S8J927	A0A4S8JFT5	Uncharacterized protein.	HMA domain-containing protein.	0.839
A0A4S8J927	A0A4S8JL63	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8J927	A0A4S8JTW9	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A4S8J927	A0A4S8JTZ1	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A4S8J927	A0A4S8JWR3	Uncharacterized protein.	HMA domain-containing protein.	0.662
A0A4S8JFT5	A0A4S8J927	HMA domain-containing protein.	Uncharacterized protein.	0.839
A0A4S8JFT5	A0A4S8JL63	HMA domain-containing protein.	Uncharacterized protein.	0.508
A0A4S8JFT5	A0A4S8JTW9	HMA domain-containing protein.	Uncharacterized protein.	0.838
A0A4S8JFT5	A0A4S8JTZ1	HMA domain-containing protein.	Uncharacterized protein.	0.837
A0A4S8JL63	A0A4S8IGF5	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8JL63	A0A4S8J6T0	Uncharacterized protein.	DsbD_2 domain-containing protein.	0.508
A0A4S8JL63	A0A4S8J927	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8JL63	A0A4S8JFT5	Uncharacterized protein.	HMA domain-containing protein.	0.508
A0A4S8JL63	A0A4S8JLV0	Uncharacterized protein.	DsbD_2 domain-containing protein.	0.508
A0A4S8JL63	A0A4S8JTW9	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8JL63	A0A4S8JTZ1	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A4S8JL63	A0A4S8JWG4	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.538
A0A4S8JL63	A0A4S8JWR3	Uncharacterized protein.	HMA domain-containing protein.	0.508

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

41

PPI enrichment p-value:

0.00626

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

8 of 947

0.75

0.6

0.0014

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2050

Condensation domain, and Siderophore metabolic process

6 of 24

2.22

4.15

1.96e-09

CL:2053

Condensation domain

5 of 19

2.24

3.71

2.58e-08

CL:2032

ACP-like superfamily, and Fatty acid synthase activity

7 of 113

1.62

2.64

2.58e-08

CL:2081

Ketoacyl-synthetase C-terminal extension, and Enoylreductase

3 of 5

2.6

2.59

1.47e-05

CL:2056

Condensation domain

2 of 12

2.05

0.92

0.0181

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005835

Fatty acid synthase complex

4 of 46

1.76

1.7

0.00021

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0596

Phosphopantetheine

7 of 58

1.91

3.87

2.20e-10

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00501

AMP-binding enzyme

5 of 46

1.86

2.38

5.24e-06

PF00668

Condensation domain

4 of 26

2.01

2.19

3.24e-05

PF13193

AMP-binding enzyme C-terminal domain

4 of 37

1.86

1.93

7.91e-05

PF00296

Luciferase-like monooxygenase

2 of 7

2.28

0.97

0.0161

PF00975

Thioesterase domain

2 of 9

2.17

0.92

0.0197

(more ...)

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036736

ACP-like superfamily

7 of 59

1.9

3.54

2.40e-09

IPR009081

Phosphopantetheine binding ACP domain

7 of 59

1.9

3.54

2.40e-09

IPR020806

Polyketide synthase, phosphopantetheine-binding domain

6 of 47

1.93

3.23

3.46e-08

IPR006162

Phosphopantetheine attachment site

5 of 36

1.97

2.76

1.04e-06

IPR020845

AMP-binding, conserved site

5 of 42

1.9

2.6

1.70e-06

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00823

Phosphopantetheine attachment site

5 of 29

2.06

3.22

1.24e-07

SM00826

PKS_DH

3 of 15

2.12

1.91

0.00018

SM00825

Beta-ketoacyl synthase

3 of 18

2.05

1.87

0.00019

SM00822

This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.

3 of 19

2.02

1.86

0.00019

SM00827

Acyl transferase domain in polyketide synthase (PKS) enzymes.

2 of 22

1.78

0.87

0.0194

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About