A0A4V4H3U6 protein (Musa balbisiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4V4H3U6

Uncharacterized protein. (577 aa)

Predicted Functional Partners:

A0A4S8JNI7

0.841

A0A4S8K711

0.841

A0A4S8IGI9

0.524

A0A4V4H7W6

0.507

A0A4S8INU9

0.506

A0A4S8IYA4

0.506

A0A4S8ICQ5

0.406

A0A4S8JBR3

0.404

A0A4S8JH60

0.404

A0A4S8IER1

0.403

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8ICQ5	A0A4S8IER1	RIC1 domain-containing protein.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.563
A0A4S8ICQ5	A0A4V4H3U6	RIC1 domain-containing protein.	Uncharacterized protein.	0.406
A0A4S8IER1	A0A4S8ICQ5	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RIC1 domain-containing protein.	0.563
A0A4S8IER1	A0A4V4H3U6	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.403
A0A4S8IGI9	A0A4V4H3U6	Cnd3 domain-containing protein.	Uncharacterized protein.	0.524
A0A4S8INU9	A0A4V4H3U6	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A4S8IYA4	A0A4V4H3U6	RRM domain-containing protein.	Uncharacterized protein.	0.506
A0A4S8JBR3	A0A4V4H3U6	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A4S8JH60	A0A4V4H3U6	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A4S8JNI7	A0A4V4H3U6	SUN domain-containing protein.	Uncharacterized protein.	0.841
A0A4S8K711	A0A4V4H3U6	SUN domain-containing protein.	Uncharacterized protein.	0.841
A0A4V4H3U6	A0A4S8ICQ5	Uncharacterized protein.	RIC1 domain-containing protein.	0.406
A0A4V4H3U6	A0A4S8IER1	Uncharacterized protein.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.403
A0A4V4H3U6	A0A4S8IGI9	Uncharacterized protein.	Cnd3 domain-containing protein.	0.524
A0A4V4H3U6	A0A4S8INU9	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A4V4H3U6	A0A4S8IYA4	Uncharacterized protein.	RRM domain-containing protein.	0.506
A0A4V4H3U6	A0A4S8JBR3	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A4V4H3U6	A0A4S8JH60	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A4V4H3U6	A0A4S8JNI7	Uncharacterized protein.	SUN domain-containing protein.	0.841
A0A4V4H3U6	A0A4S8K711	Uncharacterized protein.	SUN domain-containing protein.	0.841