STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0053860RHTO0S01e03026g1_1; Belongs to the calmodulin family. (147 aa)    
Predicted Functional Partners:
BN2166_0042940
annotation not available
    
 0.976
BN2166_0019840
Serine/threonine-protein phosphatase.
    
 0.950
BN2166_0012450
annotation not available
   
 0.947
BN2166_0073100
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.943
BN2166_0065910
annotation not available
    
 0.937
BN2166_0056420
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
   
 0.936
BN2166_0046400
BY PROTMAP: gi|814539376|emb|CEQ43228.1| SPOSA6832_05138, partial [Sporidiobolus salmonicolor].
  
 
0.932
BN2166_0020900
Peptidylprolyl isomerase.
   
 0.929
BN2166_0042410
FGENESH: predicted gene_8.96 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.926
BN2166_0071990
BY PROTMAP: gi|342320790|gb|EGU12729.1| Myosin 5 [Rhodotorula glutinis ATCC 204091]; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.925
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.