STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0032940FGENESH: predicted gene_6.216 protein. (56 aa)    
Predicted Functional Partners:
BN2166_0012110
BY PROTMAP: gi|647394753|emb|CDR35987.1| RHTO0S01e11628g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS13 family.
  
 0.999
BN2166_0025790
BY PROTMAP: gi|647395678|emb|CDR37295.1| RHTO0S02e13058g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS17 family.
  
 0.999
BN2166_0034810
40S ribosomal protein S27.
   
 0.999
BN2166_0018950
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.999
BN2166_0019650
Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family.
  
 0.999
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 0.999
BN2166_0029350
BY PROTMAP: gi|647399216|emb|CDR43775.1| RHTO0S08e05490g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS7 family.
  
 0.999
BN2166_0058250
Ribosomal protein S10p/S20e-domain containing protein.
  
 0.999
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
  
 0.999
BN2166_0047820
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.999
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.