STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0031930GTP-binding protein, SEC4. (215 aa)    
Predicted Functional Partners:
BN2166_0034460
annotation not available
    
 0.962
BN2166_0029070
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.962
BN2166_0022600
Putative GTP-binding protein ypt1.
  
0.954
BN2166_0014170
Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
    
 0.892
BN2166_0057070
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
   
 0.891
BN2166_0064280
BY PROTMAP: gi|342319548|gb|EGU11496.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.851
BN2166_0029890
annotation not available
    
 0.848
BN2166_0008240
BY PROTMAP: gi|814541159|emb|CEQ41599.1| SPOSA6832_03328, partial [Sporidiobolus salmonicolor].
    
 0.834
BN2166_0040590
Exocyst complex component Sec3-domain containing protein.
    
 0.832
BN2166_0048330
Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.832
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.