STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0050560RHTO0S25e00738g1_1. (320 aa)    
Predicted Functional Partners:
BN2166_0049470
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
 
      0.824
BN2166_0051890
annotation not available
    
 0.486
BN2166_0036000
annotation not available
    
  0.444
BN2166_0037470
Uncharacterized protein.
    
  0.444
BN2166_0059660
BY PROTMAP: gi|342321201|gb|EGU13136.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
  0.444
BN2166_0069290
Multidrug resistance protein.
    
  0.440
BN2166_0006070
Belongs to the SKP1 family.
    
  0.435
BN2166_0061160
Uncharacterized protein.
    
  0.435
BN2166_0044720
Belongs to the 14-3-3 family.
    
 0.430
BN2166_0049870
BY PROTMAP: gi|634350156|gb|KDE05429.1| 14-3-3-like protein [Microbotryum violaceum p1A1 Lamole]; Belongs to the 14-3-3 family.
    
 0.430
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.