STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_000290040S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (256 aa)    
Predicted Functional Partners:
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 0.995
BN2166_0047820
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.995
BN2166_0019660
FGENESH: predicted gene_3.417 protein.
   
 0.995
BN2166_0014470
BY PROTMAP: gi|814543697|emb|CEQ38591.1| SPOSA6832_00041, partial [Sporidiobolus salmonicolor]; Belongs to the universal ribosomal protein uS3 family.
  
 0.995
BN2166_0032930
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.995
BN2166_0052060
Uncharacterized protein.
   
 0.995
BN2166_0045970
Ribosomal protein S19e.
   
 0.995
BN2166_0067970
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.995
BN2166_0012110
BY PROTMAP: gi|647394753|emb|CDR35987.1| RHTO0S01e11628g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS13 family.
  
 0.994
BN2166_0025790
BY PROTMAP: gi|647395678|emb|CDR37295.1| RHTO0S02e13058g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS17 family.
  
 0.994
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.