STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0000340BY PROTMAP: gi|342320605|gb|EGU12544.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (497 aa)    
Predicted Functional Partners:
BN2166_0006120
Belongs to the ubiquitin-conjugating enzyme family.
    
  0.679
BN2166_0003390
annotation not available
    
  0.657
BN2166_0005040
Uncharacterized protein.
    
  0.657
BN2166_0073660
Phosphodiesterase.
    
 0.593
BN2166_0071630
DEAD-box protein abstrakt.
    
 0.592
BN2166_0054330
BY PROTMAP: gi|647394322|emb|CDR35551.1| RHTO0S01e01838g1_1 [Rhodosporidium toruloides].
    
  0.590
BN2166_0057410
FGENESH: predicted gene_11.237 protein.
    
  0.577
BN2166_0064220
annotation not available
    
  0.577
BN2166_0054980
BY PROTMAP: gi|647394255|emb|CDR35483.1| RHTO0S01e00254g1_1 [Rhodosporidium toruloides].
    
 0.559
BN2166_0026830
Uncharacterized protein.
    
 0.552
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.