STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0002390BY PROTMAP: gi|342319342|gb|EGU11291.1| putative hydrolase [Rhodotorula glutinis ATCC 204091]. (284 aa)    
Predicted Functional Partners:
BN2166_0044080
Fumarylacetoacetate hydrolase.
 
 
 
 0.906
BN2166_0041100
annotation not available
 
      0.887
BN2166_0007990
Tryptophan synthase.
    
 0.803
BN2166_0029050
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.750
BN2166_0031610
annotation not available
    
 0.742
BN2166_0051890
annotation not available
  
 
 0.723
BN2166_0049150
annotation not available
   
 0.710
BN2166_0011930
BY PROTMAP: gi|647394773|emb|CDR36007.1| RHTO0S01e12134g1_1 [Rhodosporidium toruloides].
    
 0.668
BN2166_0010480
Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
   
 0.596
BN2166_0011270
Putative mitochondrion protein.
 
 
 
 0.589
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.