STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0000730BY PROTMAP: gi|647402911|emb|CDR49097.1| RHTO0S23e00562g1_1 [Rhodosporidium toruloides]. (598 aa)    
Predicted Functional Partners:
BN2166_0053860
RHTO0S01e03026g1_1; Belongs to the calmodulin family.
   
 0.629
BN2166_0046400
BY PROTMAP: gi|814539376|emb|CEQ43228.1| SPOSA6832_05138, partial [Sporidiobolus salmonicolor].
   
 0.629
BN2166_0041040
HSF-type DNA-binding-domain containing protein.
    
 0.550
BN2166_0004490
FGENESH: predicted gene_1.449 protein.
   
 0.537
BN2166_0000120
annotation not available
   
 0.529
BN2166_0072670
BY PROTMAP: gi|814543531|emb|CEQ39224.1| SPOSA6832_00735 [Sporidiobolus salmonicolor].
   
 0.521
BN2166_0014260
BY PROTMAP: gi|512194100|gb|EPE09856.1| neuronal calcium sensor 1 [Ophiostoma piceae UAMH 11346].
   
 0.509
BN2166_0064640
BY PROTMAP: gi|647400796|emb|CDR46547.1| RHTO0S12e06062g1_1 [Rhodosporidium toruloides].
   
 0.504
MMM1
Maintenance of mitochondrial morphology protein 1; Component of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum (ER) and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the ER and mitochondria. The MDM12-MMM1 subcomplex functions in the major beta-barrel assembly pathway that is responsible for biogenesis of all outer membrane beta- barrel proteins, and acts in a late step after the SAM complex. The MDM10-MDM12-MMM1 su [...]
    
 0.472
BN2166_0037260
FGENESH: predicted gene_7.111 protein.
    
 
 0.467
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.