STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0013950Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (691 aa)    
Predicted Functional Partners:
BN2166_0031850
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
  
 0.779
BN2166_0052300
BY PROTMAP: gi|342319256|gb|EGU11206.1| putative Arg-6 protein [Rhodotorula glutinis ATCC 204091]; In the N-terminal section; belongs to the acetylglutamate kinase family.
     
 0.621
BN2166_0007990
Tryptophan synthase.
     
 0.574
BN2166_0004820
annotation not available
    
  0.552
BN2166_0028190
BY PROTMAP: gi|342320964|gb|EGU12902.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
    
  0.552
BN2166_0016170
annotation not available
    
  0.552
BN2166_0053650
annotation not available
    
  0.552
BN2166_0045800
BY PROTMAP: gi|647397081|emb|CDR39849.1| RHTO0S04e10770g1_1 [Rhodosporidium toruloides].
   
  
 0.542
BN2166_0059420
FGENESH: predicted gene_12.102 protein.
    
  0.522
BN2166_0051890
annotation not available
  
  
 0.521
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.