STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0006790BY PROTMAP: gi|342320672|gb|EGU12611.1| putative dCMP deaminase [Rhodotorula glutinis ATCC 204091]. (889 aa)    
Predicted Functional Partners:
BN2166_0000300
BY PROTMAP: gi|342320601|gb|EGU12540.1| putative dUTPase Dut [Rhodotorula glutinis ATCC 204091].
  
 0.964
BN2166_0037530
Deoxythymidylate kinase.
    
 0.953
BN2166_0065310
BY PROTMAP: gi|342319030|gb|EGU10982.1| Thymidylate synthase [Rhodotorula glutinis ATCC 204091].
  
 
 0.949
BN2166_0001470
BY PROTMAP: gi|647395515|emb|CDR36983.1| RHTO0S02e09406g1_1 [Rhodosporidium toruloides].
  
 
 0.912
BN2166_0065300
BY PROTMAP: gi|342319031|gb|EGU10983.1| Thymidylate synthase [Rhodotorula glutinis ATCC 204091].
  
 
 0.912
BN2166_0000450
annotation not available
  
 
 0.899
BN2166_0019340
Uridylate kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and dUMP as phosphate acceptors, but can also use CMP, dCMP and AMP. Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.
   
 0.865
BN2166_0031190
BY PROTMAP: gi|472585042|gb|EMS22608.1| uridine phosphorylase [Rhodosporidium toruloides NP11].
     
 0.855
BN2166_0012620
Alpha/Beta hydrolase fold.
  
 
  0.813
BN2166_0017210
annotation not available
  
 
  0.782
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.