STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0005330UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (380 aa)    
Predicted Functional Partners:
BN2166_0069610
Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
  
 0.997
BN2166_0026640
BY PROTMAP: gi|342320902|gb|EGU12840.1| galactokinase [Rhodotorula glutinis ATCC 204091].
  
 0.989
BN2166_0016770
annotation not available
  
 0.983
BN2166_0073560
UDP-glucose 6-dehydrogenase.
  
 
 0.956
BN2166_0073370
annotation not available
    
 0.949
BN2166_0039100
FGENESH: predicted gene_7.295 protein.
  
 
 0.909
BN2166_0030850
annotation not available
  
 
 0.881
BN2166_0006340
UDP-N-acetylglucosamine diphosphorylase.
    
 0.878
BN2166_0039080
BY PROTMAP: gi|342320467|gb|EGU12407.1| UDP-xylose synthase [Rhodotorula glutinis ATCC 204091].
   
0.870
BN2166_0001190
BY PROTMAP: gi|342320638|gb|EGU12577.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
  
 
 0.823
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.