STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0016650annotation not available (215 aa)    
Predicted Functional Partners:
BN2166_0037200
annotation not available
   
 
0.699
BN2166_0031030
BY PROTMAP: gi|342319567|gb|EGU11514.1| Signal transducer [Rhodotorula glutinis ATCC 204091].
      
 0.538
BN2166_0038370
annotation not available
    
 
 0.532
BN2166_0033830
BY PROTMAP: gi|342319686|gb|EGU11633.1| Copper transporter [Rhodotorula glutinis ATCC 204091].
    
 
 0.504
BN2166_0061860
BY PROTMAP: gi|342319440|gb|EGU11388.1| Metal ion transporter [Rhodotorula glutinis ATCC 204091].
      
 0.457
BN2166_0060930
FGENESH: predicted gene_12.253 protein.
      
 0.438
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.