STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0018850annotation not available (816 aa)    
Predicted Functional Partners:
BN2166_0006720
G-patch domain-containing protein.
   
 0.983
BN2166_0064990
BY PROTMAP: gi|647400760|emb|CDR46505.1| RHTO0S12e05248g1_1 [Rhodosporidium toruloides].
   
 0.957
BN2166_0027660
SF3b1 domain-containing protein.
   
 0.902
BN2166_0028710
BY PROTMAP: gi|342320986|gb|EGU12924.1| Splicing factor 3a [Rhodotorula glutinis ATCC 204091].
    
 0.902
BN2166_0017470
annotation not available
   
 0.886
BN2166_0010570
annotation not available
   
 0.874
BN2166_0001160
L domain-like protein.
   
  0.838
BN2166_0038860
BY PROTMAP: gi|647398855|emb|CDR43090.1| RHTO0S07e08196g1_1 [Rhodosporidium toruloides].
   
 0.810
BN2166_0038020
annotation not available
    
 0.783
BN2166_0003440
PHF5-like protein.
   
  0.779
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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