STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0006460BY PROTMAP: gi|647396163|emb|CDR38186.1| RHTO0S03e05358g1_1 [Rhodosporidium toruloides]. (348 aa)    
Predicted Functional Partners:
BN2166_0062880
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. Belongs to the uricase family.
 
 
 0.957
BN2166_0074500
BY PROTMAP: gi|342320369|gb|EGU12310.1| Allantoinase [Rhodotorula glutinis ATCC 204091].
    
 0.828
BN2166_0062500
BY PROTMAP: gi|647402038|emb|CDR48345.1| RHTO0S17e01640g1_1 [Rhodosporidium toruloides].
  
 
 0.712
BN2166_0032970
BY PROTMAP: gi|647399996|emb|CDR45051.1| RHTO0S10e04544g1_1 [Rhodosporidium toruloides].
  
 
 0.678
BN2166_0072690
BY PROTMAP: gi|342321462|gb|EGU13395.1| Xaa--Pro dipeptidase [Rhodotorula glutinis ATCC 204091].
    
 0.669
BN2166_0074430
BY PROTMAP: gi|342320368|gb|EGU12309.1| Phenylhydantoinase [Rhodotorula glutinis ATCC 204091].
    
 0.669
BN2166_0012510
FGENESH: predicted gene_2.420 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.596
BN2166_0044980
Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.596
BN2166_0045410
Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.596
BN2166_0049590
Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.596
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.