STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0006810BY PROTMAP: gi|342320670|gb|EGU12609.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1120 aa)    
Predicted Functional Partners:
BN2166_0013190
annotation not available
   
 0.974
BN2166_0014120
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.974
BN2166_0052160
BY PROTMAP: gi|647394553|emb|CDR35784.1| RHTO0S01e07030g1_1 [Rhodosporidium toruloides].
    
 0.974
BN2166_0056900
Soluble NSF attachment protein, SNAP-domain containing protein.
    
 0.964
BN2166_0073350
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.943
BN2166_0030370
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.906
BN2166_0042710
BY PROTMAP: gi|647396024|emb|CDR38046.1| RHTO0S03e02322g1_1 [Rhodosporidium toruloides].
    
 0.900
BN2166_0044890
BY PROTMAP: gi|342321510|gb|EGU13443.1| SNARE protein YKT6 [Rhodotorula glutinis ATCC 204091]; Belongs to the synaptobrevin family.
    
 0.898
BN2166_0053030
Vesicle-associated membrane protein; Belongs to the synaptobrevin family.
    
 0.898
BN2166_0047600
FGENESH: predicted gene_9.106 protein; Belongs to the syntaxin family.
    
0.843
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.