STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0009430annotation not available (383 aa)    
Predicted Functional Partners:
BN2166_0053320
BY PROTMAP: gi|472584245|gb|EMS21851.1| cystathionine gamma-lyase [Rhodosporidium toruloides NP11].
 
 0.964
BN2166_0070790
Putative cystathionine gamma-synthase.
  
 0.963
BN2166_0049630
O-acetylhomoserine ami.
 
 0.938
BN2166_0049150
annotation not available
    
 0.933
BN2166_0007990
Tryptophan synthase.
    
 0.925
BN2166_0038950
annotation not available
  
 
 0.913
BN2166_0050540
BY PROTMAP: gi|647403143|emb|CDR49301.1| RHTO0S25e00782g2_1 [Rhodosporidium toruloides].
 
 0.913
BN2166_0050670
BY PROTMAP: gi|647403126|emb|CDR49284.1| RHTO0S25e00430g1_1 [Rhodosporidium toruloides].
 
 0.913
BN2166_0005030
Aspartate aminotransferase.
   
 0.903
BN2166_0029250
Aspartate aminotransferase.
   
 0.897
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.