STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0007810Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions. (260 aa)    
Predicted Functional Partners:
BN2166_0002130
BY PROTMAP: gi|647394874|emb|CDR36108.1| RHTO0S01e14400g1_1 [Rhodosporidium toruloides].
  
 
 0.953
BN2166_0066420
annotation not available
  
 
 0.953
BN2166_0034950
Nucleotide-diphospho-sugar transferase.
  
 
 0.950
BN2166_0009000
Phosphotransferase.
     
 0.905
BN2166_0060160
Phosphotransferase.
     
 0.905
BN2166_0054120
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.902
BN2166_0049730
DnaJ-domain-containing protein.
 
      0.899
BN2166_0051640
BY PROTMAP: gi|342319277|gb|EGU11227.1| Riboflavin kinase [Rhodotorula glutinis ATCC 204091].
   
 0.887
BN2166_0005310
2'-5' RNA ligase superfamily-domain containing protein.
  
 
 0.877
BN2166_0008140
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
    
 0.865
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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