STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0007860annotation not available (536 aa)    
Predicted Functional Partners:
BN2166_0001120
BY PROTMAP: gi|647395577|emb|CDR37101.1| RHTO0S02e10792g1_1 [Rhodosporidium toruloides].
    
 0.716
BN2166_0030520
annotation not available
    
 0.716
BN2166_0051310
FGENESH: predicted gene_9.477 protein.
    
 0.716
BN2166_0061460
FGENESH: predicted gene_12.306 protein.
    
 0.716
BN2166_0040360
annotation not available
    
 0.685
BN2166_0063460
FGENESH: predicted gene_13.176 protein.
    
 0.637
BN2166_0064120
BY PROTMAP: gi|342319541|gb|EGU11489.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.637
BN2166_0015800
FGENESH: predicted gene_3.31 protein.
    
 0.566
BN2166_0015900
BY PROTMAP: gi|472582308|gb|EMS20000.1| alcohol dehydrogenase [Rhodosporidium toruloides NP11].
    
 0.566
BN2166_0010330
BY PROTMAP: gi|342319909|gb|EGU11854.1| DUF1275 domain protein [Rhodotorula glutinis ATCC 204091].
    
 0.566
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.