STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0009730Mandelate racemase/muconate lactonizing enzyme. (480 aa)    
Predicted Functional Partners:
BN2166_0009710
FGENESH: predicted gene_2.140 protein; Belongs to the DapA family.
     
 0.864
BN2166_0000120
annotation not available
   
 0.689
BN2166_0073360
Vaculolar membrane protein-domain containing protein.
    
 0.674
BN2166_0048990
SLD3 domain-containing protein.
    
 0.661
BN2166_0048460
annotation not available
    
 0.648
BN2166_0037940
FGENESH: predicted gene_7.179 protein.
   
 0.628
BN2166_0027620
BZIP domain-containing protein.
   
 0.628
BN2166_0073100
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.628
BN2166_0059990
BY PROTMAP: gi|342321183|gb|EGU13118.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
   
 0.626
BN2166_0058780
BY PROTMAP: gi|342320583|gb|EGU12523.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
   
 0.626
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.