STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0009710FGENESH: predicted gene_2.140 protein; Belongs to the DapA family. (318 aa)    
Predicted Functional Partners:
BN2166_0009730
Mandelate racemase/muconate lactonizing enzyme.
     
 0.864
BN2166_0004000
FGENESH: predicted gene_1.400 protein.
   
 
 0.831
BN2166_0029250
Aspartate aminotransferase.
   
 0.808
BN2166_0064980
BY PROTMAP: gi|472585556|gb|EMS23107.1| GTP cyclohydrolase II [Rhodosporidium toruloides NP11].
 
      0.806
BN2166_0052940
Malate synthase; Belongs to the malate synthase family.
   
 
 0.793
BN2166_0005030
Aspartate aminotransferase.
   
  0.789
BN2166_0044090
BY PROTMAP: gi|342321546|gb|EGU13479.1| D-amino-acid oxidase [Rhodotorula glutinis ATCC 204091].
   
 
  0.780
BN2166_0007990
Tryptophan synthase.
    
  0.777
BN2166_0009620
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.777
BN2166_0067040
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.777
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.