STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0013890annotation not available (382 aa)    
Predicted Functional Partners:
BN2166_0069290
Multidrug resistance protein.
    
 
 0.585
BN2166_0030900
FGENESH: predicted gene_6.12 protein.
   
  
 0.540
BN2166_0032630
BY PROTMAP: gi|342319639|gb|EGU11586.1| Smarcc1 protein [Rhodotorula glutinis ATCC 204091].
      
 0.539
BN2166_0004720
BY PROTMAP: gi|647396351|emb|CDR38455.1| RHTO0S03e09692g1_1 [Rhodosporidium toruloides].
   
 
 0.517
BN2166_0049740
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
      0.487
BN2166_0036770
annotation not available
   
  
 0.484
BN2166_0021990
Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.
    
 
 0.483
BN2166_0035620
annotation not available
 
      0.475
BN2166_0047740
BY PROTMAP: gi|342319964|gb|EGU11909.1| Sly41p [Rhodotorula glutinis ATCC 204091].
      
 0.456
BN2166_0072350
BY PROTMAP: gi|342320777|gb|EGU12716.1| Nucleolar protein NOP2 [Rhodotorula glutinis ATCC 204091]; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
      0.448
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.