STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_001096025S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (361 aa)    
Predicted Functional Partners:
BN2166_0048320
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
  
 0.933
BN2166_0072260
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.917
BN2166_0020560
Tr-type G domain-containing protein.
  
  
 0.913
BN2166_0029770
annotation not available
  
  
 0.913
BN2166_0044180
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
  
 0.880
BN2166_0045780
annotation not available
   
  
 0.878
BN2166_0063410
RPOLD domain-containing protein.
   
  
 0.878
BN2166_0031140
BY PROTMAP: gi|342319576|gb|EGU11523.1| 60S ribosomal protein L3 [Rhodotorula glutinis ATCC 204091]; Belongs to the universal ribosomal protein uL3 family.
   
  
 0.877
BN2166_0036410
BY PROTMAP: gi|647398570|emb|CDR42588.1| RHTO0S07e01794g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL3 family.
   
  
 0.877
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
   
    0.872
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.