STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0014840Alkyl transferase; Belongs to the UPP synthase family. (316 aa)    
Predicted Functional Partners:
BN2166_0069980
Decaprenyl diphosphate synthase-like protein.
   
 0.985
BN2166_0017260
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.945
BN2166_0004700
Isoprenoid synthase domain-containing protein.
  
 
 0.927
BN2166_0048590
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.894
BN2166_0030910
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.887
BN2166_0009630
annotation not available
     
 0.874
BN2166_0049390
annotation not available
     
 0.853
BN2166_0037380
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
    
 0.817
BN2166_0008360
Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.
   
 0.803
BN2166_0001970
Phytoene synthase.
     
 0.790
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.