STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0017240Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (218 aa)    
Predicted Functional Partners:
BN2166_0037160
BY PROTMAP: gi|342320542|gb|EGU12482.1| Parotid hormone [Rhodotorula glutinis ATCC 204091].
   
 0.997
BN2166_0050910
annotation not available
   
 0.989
BN2166_0063570
annotation not available
    
 0.989
BN2166_0017080
BY PROTMAP: gi|342319088|gb|EGU11039.1| Transmembrane protein 85 [Rhodotorula glutinis ATCC 204091].
    
   0.934
BN2166_0002700
BY PROTMAP: gi|342319356|gb|EGU11305.1| polyketide synthase [Rhodotorula glutinis ATCC 204091].
   
 0.908
BN2166_0018250
Snf7-domain containing protein.
   
 0.874
BN2166_0019350
Snf7-domain containing protein.
   
 0.870
BN2166_0032370
annotation not available
    
 0.869
BN2166_0044350
Snf7-domain containing protein.
     
 0.844
BN2166_0008080
annotation not available
     
 0.811
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.